MolNFT v1 · #66373 · protein
Crystal structure of surface lipoprotein
3HOE · Tbpb: “Crystal structure of surface lipoprotein”. X-ray diffraction, 5 pockets (best druggability 0.57). MolNFT v1 #66373 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3HOE
- Type
- protein
- Length
- 484 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tbpb
- UniProt
- Q44124
- Pockets
- 5 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Tbpb | protein | 242 | 6% helix, 44% strand | Q44124 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 362 | 0.57 | 0.75 | 44 | empty |
| 2 | 143 | 0.48 | 0.78 | 22 | empty |
| 3 | 134 | 0.48 | 0.78 | 23 | empty |
| 4 | 152 | 0.47 | 0.77 | 31 | empty |
| 5 | 104 | 0.40 | 0.76 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 156 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3HOE · Crystal Structure of Surface Lipoprotein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q44124
- Elsewhere: RCSB PDB 3HOE · PDBe 3HOE · UniProt Q44124
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