MolNFT v1 · #6636 · RNA
Crystal structure of HIV-1 reverse transcription primer TRNA(LYS3)
1FIR: “Crystal structure of HIV-1 reverse transcription primer TRNA(LYS3)”. X-ray diffraction, 2 ligands (MG, NA), 2 pockets (best druggability 0.62). MolNFT v1 #6636 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1FIR
- Type
- RNA
- Length
- 76 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 reverse transcription primer TRNA(LYS3)
- Ligands
- MG, NA
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HIV-1 reverse transcription primer TRNA(LYS3) | rna | 76 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 624 | 0.62 | 0.75 | 32 | MG |
| 2 | 309 | 0.52 | 0.75 | 22 | empty |
Modifications
Observed in the structure: 15 modified (nucleotide modification).
Compared structures
- 1FIR · Crystal structure of HIV-1 reverse transcription primer TRNA(LYS3) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1FIR · PDBe 1FIR
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