MolNFT v1 · #66346 · protein
Crystal structure of protein BT_411 (putative chitobiase, fragment 298-461) from bacteroides thetaiotaomicron, northeast structural genomics consortium target BTR319D
3HNM: “Crystal structure of protein BT_411 (putative chitobiase, fragment 298-461) from bacteroides…”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.57). MolNFT v1 #66346 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3HNM
- Type
- protein
- Length
- 668 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative chitobiase
- UniProt
- Q8AAM3
- Ligands
- MG
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Putative chitobiase | protein | 167 | 7% helix, 42% strand | Q8AAM3 |
Ligands and binding sites
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 200 | 0.57 | 0.79 | 28 | empty |
Interfaces
2 interfaces between chains.
- B–D · 689 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 411 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3HNM · Crystal Structure of Protein BT_411 (putative chitobiase, fragment 298-461) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8AAM3
- Elsewhere: RCSB PDB 3HNM · PDBe 3HNM · UniProt Q8AAM3
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