MolNFT v1 · #66324 · protein
Crystal structure of a FMN-binding domain of flavin reductases-like enzyme (SBAL_0626) from shewanella baltica OS155 at 1.50 a resolution
3HMZ · Flavin reductase domain protein, FMN-binding: “Crystal structure of a FMN-binding domain of flavin reductases-like enzyme (SBAL_0626) from shewanella…”. X-ray diffraction, 2 ligands (FMN, UNL), 2 pockets (best druggability 0.49).…
- PDB
- 3HMZ
- Type
- protein
- Length
- 191 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flavin reductase domain protein, FMN-binding
- UniProt
- A3D092
- Ligands
- FMN, UNL
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flavin reductase domain protein, FMN-binding | protein | 191 | 23% helix, 39% strand | A3D092 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
- UNL · Unknown ligand · ligand · chains A
- EDO · 1,2-ethanediol · additive · 6 copies · chains A
- IMD · Imidazole · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 175 | 0.49 | 0.77 | 26 | FMN, UNL, EDO |
| 2 | 59 | 0.27 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3HMZ · Crystal structure of a FMN-binding domain of flavin reductases-like enzyme (SBAL_0626)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3D092
- Elsewhere: RCSB PDB 3HMZ · PDBe 3HMZ · UniProt A3D092
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