MolNFT v1 · #66242 · protein
Crystal structure of RICE(ORYZA sativa) RRP46
3HKM · OS03G0854200 protein: “Crystal structure of RICE(ORYZA sativa) RRP46”. X-ray diffraction, 3 pockets (best druggability 0.77). MolNFT v1 #66242 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3HKM
- Type
- protein
- Length
- 615 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- OS03G0854200 protein
- EC
- 3.1.13.-
- UniProt
- Q84T68
- Pockets
- 3 · best druggability 0.77
Structure
x-ray diffraction · 3 distinct chains · 29% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | OS03G0854200 protein (EC 3.1.13.-) | protein | 207 | 29% helix, 32% strand | Q84T68 |
| B | OS03G0854200 protein (EC 3.1.13.-) | protein | 213 | 28% helix, 35% strand | Q84T68 |
| C | OS03G0854200 protein (EC 3.1.13.-) | protein | 195 | 30% helix, 32% strand | Q84T68 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 737 | 0.77 | 0.82 | 65 | empty |
| 2 | 364 | 0.64 | 0.79 | 55 | empty |
| 3 | 79 | 0.41 | 0.79 | 20 | empty |
Interfaces
3 interfaces between chains.
- A–B · 621 Ų buried · 11 hydrogen bonds · protein-protein
- A–C · 321 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 138 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q84T68
- Elsewhere: RCSB PDB 3HKM · PDBe 3HKM · UniProt Q84T68
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