MolNFT v1 · #66202 · protein

Crystal structure of putative alpha-ribazole-5'-phosphate phosphatase cobc from vibrio parahaemolyticus

3HJG: “Crystal structure of putative alpha-ribazole-5'-phosphate phosphatase cobc from vibrio parahaemolyticus”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.70). MolNFT v1 #66202 on GenesisL1: 3D structure, binding…

PDB: 3HJG
Type: protein
Length: 404 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative alpha-ribazole-5'-phosphate phosphatase cobc
UniProt: Q87Q43
Ligands: SO4
Pockets: 2 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Putative alpha-ribazole-5'-phosphate phosphatase cobc	protein	202	38% helix, 19% strand	Q87Q43

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	557	0.70	0.79	62	SO4
2	107	0.48	0.80	20	SO4

Interfaces

1 interface between chains.

A–B · 794 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

3HJG · Crystal structure of putative alpha-ribazole-5'-phosphate phosphatase CobC FROM Vibrio… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q87Q43
Elsewhere: RCSB PDB 3HJG · PDBe 3HJG · UniProt Q87Q43

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