MolNFT v1 · #66177 · protein
Crystal structure of saporin-L1 mutant (Y73A) from saponaria officinalis
3HIQ · Vacuolar saporin: “Crystal structure of saporin-L1 mutant (Y73A) from saponaria officinalis”. X-ray diffraction, 4 pockets (best druggability 0.66). MolNFT v1 #66177 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3HIQ
- Type
- protein
- Length
- 517 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vacuolar saporin
- EC
- 3.2.2.22
- UniProt
- Q2QEH4
- Pockets
- 4 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuolar saporin (EC 3.2.2.22) | protein | 259 | 37% helix, 22% strand | Q2QEH4 |
| B | Vacuolar saporin (EC 3.2.2.22) | protein | 258 | 38% helix, 22% strand | Q2QEH4 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 399 | 0.66 | 0.79 | 44 | empty |
| 2 | 312 | 0.60 | 0.78 | 45 | empty |
| 3 | 138 | 0.47 | 0.78 | 22 | empty |
| 4 | 112 | 0.46 | 0.79 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 771 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3HIQ · Crystal structure of Saporin-L1 mutant (Y73A) from Saponaria officinalis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2QEH4
- Elsewhere: RCSB PDB 3HIQ · PDBe 3HIQ · UniProt Q2QEH4
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