MolNFT v1 · #66015 · protein

Crystal structure of susd superfamily protein (NP_809182.1) from bacteroides thetaiotaomicron vpi-5482 at 1.50 a resolution

3HDX: “Crystal structure of susd superfamily protein (NP_809182.1) from bacteroides thetaiotaomicron vpi-5482 at…”. X-ray diffraction, 3 pockets (best druggability 0.39). MolNFT v1 #66015 on GenesisL1: 3D structure, binding sites and…

PDB: 3HDX
Type: protein
Length: 456 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Susd superfamily protein
UniProt: Q8AB42
Pockets: 3 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Susd superfamily protein	protein	456	53% helix, 5% strand	Q8AB42

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 11 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	89	0.39	0.77	14	EDO
2	69	0.39	0.79	18	empty
3	75	0.30	0.73	19	EDO

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

3HDX · Crystal structure of SusD superfamily protein (NP_809182.1) from BACTEROIDES… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8AB42
Elsewhere: RCSB PDB 3HDX · PDBe 3HDX · UniProt Q8AB42

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