MolNFT v1 · #65661 · protein
Crystal structure of a snoal-like protein of unknown function (BTH_II0226) from burkholderia thailandensis E264 at 1.60 a resolution
3H3H · Uncharacterized snoal-like protein: “Crystal structure of a snoal-like protein of unknown function (BTH_II0226) from burkholderia thailandensis…”. X-ray diffraction, 1 ligand (UNL), 3 pockets (best druggability 0.73). MolNFT v1…
- PDB
- 3H3H
- Type
- protein
- Length
- 238 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized snoal-like protein
- UniProt
- Q2T8S1
- Ligands
- UNL
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized snoal-like protein | protein | 118 | 39% helix, 35% strand | Q2T8S1 |
| B | Uncharacterized snoal-like protein | protein | 120 | 35% helix, 35% strand | Q2T8S1 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · 2 copies · chains A, B
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 212 | 0.73 | 0.88 | 27 | UNL |
| 2 | 141 | 0.63 | 0.85 | 20 | UNL |
| 3 | 84 | 0.36 | 0.76 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 967 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3H3H · Crystal structure of a snoal-like protein of unknown function (bth_ii0226) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2T8S1
- Elsewhere: RCSB PDB 3H3H · PDBe 3H3H · UniProt Q2T8S1
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