MolNFT v1 · #65606 · protein
Structure of ubiquitin in complex with CD ions
3H1U: “Structure of ubiquitin in complex with CD ions”. X-ray diffraction, 1 ligand (CD), 1 pocket (best druggability 0.26). MolNFT v1 #65606 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3H1U
- Type
- protein
- Length
- 150 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin
- UniProt
- P62990
- Ligands
- CD
- Pockets
- 1 · best druggability 0.26
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ubiquitin | protein | 75 | 20% helix, 28% strand | P62990 |
Ligands and binding sites
- CD · Cadmium ion · metal · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.26 | 0.74 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 538 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3H1U · Structure of ubiquitin in complex with Cd ions · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P62990
- Elsewhere: RCSB PDB 3H1U · PDBe 3H1U · UniProt P62990
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.