MolNFT v1 · #65603 · protein
Order-disorder structure of fluorescent protein FP480
3H1R: “Order-disorder structure of fluorescent protein FP480”. X-ray diffraction, 1 ligand (NRQ), 1 pocket (best druggability 0.74). MolNFT v1 #65603 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3H1R
- Type
- protein
- Length
- 223 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fluorescent protein FP480
- Ligands
- NRQ
- Pockets
- 1 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fluorescent protein FP480 | protein | 223 | 8% helix, 56% strand | — |
Ligands and binding sites
- NRQ · {(4Z)-4-(4-hydroxybenzylidene)-2-[3-(methylthio) propanimidoyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.74 | 0.98 | 22 | NRQ |
Modifications
Observed in the structure: 2 cofactor (chromophore).
Compared structures
- 3H1R · Order-disorder structure of fluorescent protein FP480 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3H1R · PDBe 3H1R
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