MolNFT v1 · #65545 · protein

The crystal structure of a putative nicotinate-nucleotide adenylyltransferase from vibrio parahaemolyticus

3H05 · Uncharacterized protein VPA0413: “The crystal structure of a putative nicotinate-nucleotide adenylyltransferase from vibrio parahaemolyticus”. X-ray diffraction, 1 ligand (CL), 3 pockets (best druggability 0.51). MolNFT v1 #65545 on…

PDB: 3H05
Type: protein
Length: 318 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein VPA0413
UniProt: Q87J40
Ligands: CL
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein VPA0413	protein	155	46% helix, 17% strand	Q87J40
B	Uncharacterized protein VPA0413	protein	163	44% helix, 17% strand	Q87J40

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	231	0.51	0.76	36	CL
2	159	0.42	0.74	30	CL
3	72	0.37	0.78	20	empty

Interfaces

1 interface between chains.

A–B · 1055 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

3H05 · The Crystal Structure of a Putative Nicotinate-nucleotide Adenylyltransferase from Vibrio… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q87J40
Elsewhere: RCSB PDB 3H05 · PDBe 3H05 · UniProt Q87J40

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