MolNFT v1 · #65535 · protein
Crystal structure of a susd superfamily protein (BF3413) from bacteroides fragilis nctc 9343 at 2.10 a resolution
3GZS · Uncharacterized susd superfamily protein: “Crystal structure of a susd superfamily protein (BF3413) from bacteroides fragilis nctc 9343 at 2.10 a…”. X-ray diffraction, 7 pockets (best druggability 0.71). MolNFT v1 #65535 on…
- PDB
- 3GZS
- Type
- protein
- Length
- 990 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized susd superfamily protein
- UniProt
- Q5L9X2
- Pockets
- 7 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized susd superfamily protein | protein | 495 | 49% helix, 6% strand | Q5L9X2 |
Ligands and binding sites
- ACT · Acetate ion · additive · 7 copies · chains A, B
- GOL · Glycerol · additive · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 704 | 0.71 | 0.78 | 67 | GOL |
| 2 | 205 | 0.67 | 0.85 | 35 | ACT |
| 3 | 198 | 0.66 | 0.85 | 31 | ACT |
| 4 | 155 | 0.48 | 0.77 | 20 | ACT |
| 5 | 131 | 0.48 | 0.78 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 428 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 28 modified (engineered, oxidation).
Compared structures
- 3GZS · Crystal structure of a susd superfamily protein (bf3413) from bacteroides fragilis nctc… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5L9X2
- Elsewhere: RCSB PDB 3GZS · PDBe 3GZS · UniProt Q5L9X2
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