MolNFT v1 · #65534 · protein
Crystal structure of an uncharacterized protein with a cystatin-like fold (CC_2572) from caulobacter vibrioides at 1.40 a resolution
3GZR · Uncharacterized protein with a NTF2-like fold: “Crystal structure of an uncharacterized protein with a cystatin-like fold (CC_2572) from caulobacter…”. X-ray diffraction, 2 ligands (UNL, SO4), 3 pockets (best druggability 0.75).…
- PDB
- 3GZR
- Type
- protein
- Length
- 285 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein with a NTF2-like fold
- UniProt
- Q9A585
- Ligands
- UNL, SO4
- Pockets
- 3 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein with a NTF2-like fold | protein | 143 | 31% helix, 42% strand | Q9A585 |
| B | Uncharacterized protein with a NTF2-like fold | protein | 142 | 31% helix, 42% strand | Q9A585 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · 4 copies · chains A, B
- SO4 · Sulfate ion · ion · 5 copies · chains A, B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 96 | 0.75 | 0.96 | 27 | UNL |
| 2 | 113 | 0.74 | 0.94 | 28 | UNL |
| 3 | 229 | 0.53 | 0.77 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 2009 Ų buried · 44 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3GZR · Crystal structure of an uncharacterized protein with a cystatin-like fold (CC_2572) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9A585
- Elsewhere: RCSB PDB 3GZR · PDBe 3GZR · UniProt Q9A585
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