MolNFT v1 · #65444 · RNA
Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride
3GX6 · RNA (94-mer): “Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese…”. X-ray diffraction, 2 ligands (SAM, MN), 4 pockets (best druggability 0.75). MolNFT v1 #65444 on GenesisL1: 3D…
- PDB
- 3GX6
- Type
- RNA
- Length
- 94 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (94-mer)
- Ligands
- SAM, MN
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (94-mer) | rna | 94 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1079 | 0.75 | 0.79 | 44 | SAM, MN |
| 2 | 410 | 0.59 | 0.76 | 22 | empty |
| 3 | 261 | 0.49 | 0.75 | 17 | empty |
| 4 | 76 | 0.28 | 0.73 | 9 | MN |
Compared structures
- 3GX6 · Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3GX6 · PDBe 3GX6
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