MolNFT v1 · #65426 · protein
Structure of the C-terminal domain of a putative HIV-1 GP41 fusion intermediate
3GWO · Envelope glycoprotein GP160: “Structure of the C-terminal domain of a putative HIV-1 GP41 fusion intermediate”. X-ray diffraction, 2 ligands (JEF, NA). MolNFT v1 #65426 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3GWO
- Type
- protein
- Length
- 94 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Envelope glycoprotein GP160
- UniProt
- Q70626
- Ligands
- JEF, NA
Structure
x-ray diffraction · 2 distinct chains · 95% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Envelope glycoprotein GP160 | protein | 53 | 94% helix, 0% strand | Q70626 |
| B | Envelope glycoprotein GP160 | protein | 41 | 95% helix, 0% strand | Q70626 |
Ligands and binding sites
- JEF · O-(O-(2-aminopropyl)-O'-(2-methoxyethyl)polypropylene glycol 500) · ligand · 2 copies · chains A
- NA · Sodium ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 909 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 3GWO · Structure of the C-terminal Domain of a Putative HIV-1 gp41 Fusion Intermediate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q70626
- Elsewhere: RCSB PDB 3GWO · PDBe 3GWO · UniProt Q70626
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.