MolNFT v1 · #65390 · RNA
The 1.2 angstroem crystal structure of an E.COLI trnaser acceptor stem microhelix reveals two magnesium binding sites
3GVN · 5'-R(*GP*GP*UP*GP*AP*GP*G)-3': “The 1.2 angstroem crystal structure of an E.COLI trnaser acceptor stem microhelix reveals two magnesium…”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #65390 on GenesisL1: 3D structure, binding sites…
- PDB
- 3GVN
- Type
- RNA
- Length
- 14 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*GP*UP*GP*AP*GP*G)-3'; 5'-R(*CP*CP*UP*CP*AP*CP*C)-3'
- Ligands
- MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-R(*GP*GP*UP*GP*AP*GP*G)-3' | rna | 7 | — | — |
| B | 5'-R(*CP*CP*UP*CP*AP*CP*C)-3' | rna | 7 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 352 Ų buried · 36 hydrogen bonds · nucleic-nucleic
Compared structures
- 3GVN · The 1.2 Angstroem crystal structure of an E.coli tRNASer acceptor stem microhelix reveals… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3GVN · PDBe 3GVN
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