MolNFT v1 · #65389 · protein
Structure of the homodimeric wxg-100 family protein from streptococcus agalactiae
3GVM · Putative uncharacterized protein SAG1039: “Structure of the homodimeric wxg-100 family protein from streptococcus agalactiae”. X-ray diffraction, 2 pockets (best druggability 0.57). MolNFT v1 #65389 on GenesisL1: 3D structure…
- PDB
- 3GVM
- Type
- protein
- Length
- 381 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein SAG1039
- UniProt
- Q8DZR0
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 3 distinct chains · 87% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein SAG1039 | protein | 96 | 86% helix, 2% strand | Q8DZR0 |
| B, D | Putative uncharacterized protein SAG1039 | protein | 94 | 87% helix, 2% strand | Q8DZR0 |
| C | Putative uncharacterized protein SAG1039 | protein | 97 | 87% helix, 2% strand | Q8DZR0 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 248 | 0.57 | 0.79 | 32 | empty |
| 2 | 73 | 0.35 | 0.77 | 12 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1993 Ų buried · 15 hydrogen bonds · protein-protein
- C–D · 1939 Ų buried · 12 hydrogen bonds · protein-protein
- B–D · 544 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3GVM · Structure of the homodimeric WXG-100 family protein from Streptococcus agalactiae · the same entry in another collection · chain D against D, TM-score 1.00
- Q8DZR0 · AlphaFold monomer V2.0 prediction for esat-6-like protein SAG1039 (Q8DZR0) · a predicted model of the same protein · chain C against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DZR0
- Elsewhere: RCSB PDB 3GVM · PDBe 3GVM · UniProt Q8DZR0
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