MolNFT v1 · #65245 · protein
Crystal structure of NTF2-superfamily protein with unknown function (NP_977240.1) from bacillus cereus atcc 10987 at 1.25 a resolution
3GRD · Uncharacterized NTF2-superfamily protein: “Crystal structure of NTF2-superfamily protein with unknown function (NP_977240.1) from bacillus cereus atcc…”. X-ray diffraction, 1 ligand (NA), 4 pockets (best druggability 0.65). MolNFT…
- PDB
- 3GRD
- Type
- protein
- Length
- 265 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized NTF2-superfamily protein
- UniProt
- Q73CZ7
- Ligands
- NA
- Pockets
- 4 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 29% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized NTF2-superfamily protein | protein | 133 | 29% helix, 46% strand | Q73CZ7 |
| B | Uncharacterized NTF2-superfamily protein | protein | 132 | 29% helix, 46% strand | Q73CZ7 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 211 | 0.65 | 0.83 | 27 | ACT |
| 2 | 217 | 0.64 | 0.83 | 26 | ACT |
| 3 | 80 | 0.33 | 0.74 | 14 | empty |
| 4 | 60 | 0.29 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1057 Ų buried · 23 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 3GRD · Crystal structure of NTF2-superfamily protein with unknown function (NP_977240.1) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q73CZ7
- Elsewhere: RCSB PDB 3GRD · PDBe 3GRD · UniProt Q73CZ7
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