MolNFT v1 · #65111 · protein

P1 crystal structure of the N-terminal R1-R7 of murine mvp

3GNF · Major vault protein: “P1 crystal structure of the N-terminal R1-R7 of murine mvp”. X-ray diffraction, 2 pockets (best druggability 0.44). MolNFT v1 #65111 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3GNF
Type: protein
Length: 365 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major vault protein
UniProt: Q9EQK5
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Major vault protein	protein	365	0% helix, 52% strand	Q9EQK5

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	163	0.44	0.75	35	empty
2	53	0.28	0.74	17	empty

Compared structures

3GNF · P1 Crystal structure of the N-terminal R1-R7 of murine MVP · the same entry in another collection · chain B against B, TM-score 1.00
Q9EQK5 · AlphaFold monomer V2.0 prediction for major vault protein (Q9EQK5) · a predicted model of the same protein · chain B against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9EQK5
Elsewhere: RCSB PDB 3GNF · PDBe 3GNF · UniProt Q9EQK5

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