MolNFT v1 · #65093 · protein

Crystal structure of beta-lactamse inhibitory protein-like protein (blp) at 1.05 ångström resolution

3GMX: “Crystal structure of beta-lactamse inhibitory protein-like protein (blp) at 1.05 ångström resolution”. X-ray diffraction, 5 pockets (best druggability 0.77). MolNFT v1 #65093 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 3GMX
Type: protein
Length: 308 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Blp
UniProt: P97062
Pockets: 5 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	Blp	protein	154	21% helix, 32% strand	P97062

Ligands and binding sites

ACT · Acetate ion · additive · 4 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	104	0.77	0.97	32	ACT
2	210	0.54	0.78	23	empty
3	131	0.51	0.80	23	empty
4	116	0.41	0.76	20	empty
5	107	0.38	0.75	19	empty

Interfaces

1 interface between chains.

B–A · 1241 Å² buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

3GMX · Crystal Structure of Beta-Lactamse Inhibitory Protein-Like Protein (BLP) at 1.05 Angstrom… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P97062
Elsewhere: RCSB PDB 3GMX · PDBe 3GMX · UniProt P97062

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