MolNFT v1 · #64986 · DNA
Crystal structure of a DNA duplex containing 7,8- DIHYDROPYRIDOL[2,3-D]PYRIMIDIN-2-one
3GJL · 5'-D(*CP*GP*CP*GP*AP*A)-3': “Crystal structure of a DNA duplex containing 7,8- DIHYDROPYRIDOL[2,3-D]PYRIMIDIN-2-one”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #64986 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3GJL
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*GP*CP*GP*AP*A)-3'; 5'-D(P*TP*TP*(B7C)P*GP*CP*G)-3'
- Ligands
- NA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*CP*GP*CP*GP*AP*A)-3' | dna | 6 | — | — |
| B | 5'-D(P*TP*TP*(B7C)P*GP*CP*G)-3' | dna | 6 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 232 Ų buried · 21 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 3GJL · crystal structure of a DNA duplex containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3GJL · PDBe 3GJL
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.