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MolNFT v1 · #64886 · DNA

Locating monovalent cations in one turn of G/C rich B-DNA

3GGK · 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3': “Locating monovalent cations in one turn of G/C rich B-DNA”. X-ray diffraction, 2 ligands (MG, RB). MolNFT v1 #64886 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
3GGK
Type
DNA
Length
10 nucleotides
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3'
Ligands
MG, RB

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3'dna10——

Ligands and binding sites

  • MG · Magnesium ion · metal · 5 copies · chains A
  • RB · Rubidium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 3GGK · Locating monovalent cations in one turn of G/C rich B-DNA · the same entry in another collection · chain A against A, TM-score 1.00

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