MolNFT v1 · #64839 · protein

Glutaconyl-CoA decarboxylase a subunit from clostridium symbiosum apoprotein

3GF7 · Glutaconyl-CoA decarboxylase subunit a: “Glutaconyl-CoA decarboxylase a subunit from clostridium symbiosum apoprotein”. X-ray diffraction, 1 ligand (SO4), 5 pockets (best druggability 0.59). MolNFT v1 #64839 on GenesisL1: 3D…

PDB: 3GF7
Type: protein
Length: 543 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glutaconyl-CoA decarboxylase subunit a
EC: 4.1.1.70
UniProt: B7TVP1
Ligands: SO4
Pockets: 5 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glutaconyl-CoA decarboxylase subunit a (EC 4.1.1.70)	protein	543	40% helix, 18% strand	B7TVP1

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	172	0.59	0.82	38	empty
2	97	0.50	0.82	24	empty
3	153	0.47	0.77	29	empty
4	76	0.37	0.77	22	empty
5	70	0.28	0.72	24	empty

Compared structures

3GF7 · Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum apoprotein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B7TVP1
Elsewhere: RCSB PDB 3GF7 · PDBe 3GF7 · UniProt B7TVP1

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