MolNFT v1 · #64838 · protein
Crystal structure of a bacterial lipoprotein (BT_1233) from bacteroides thetaiotaomicron vpi-5482 at 1.69 a resolution
3GF6 · Uncharacterized bacterial lipoprotein: “Crystal structure of a bacterial lipoprotein (BT_1233) from bacteroides thetaiotaomicron vpi-5482 at 1.69 a…”. X-ray diffraction, 1 pocket (best druggability 0.67). MolNFT v1 #64838 on…
- PDB
- 3GF6
- Type
- protein
- Length
- 437 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized bacterial lipoprotein
- UniProt
- Q8A8D4
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized bacterial lipoprotein | protein | 219 | 4% helix, 49% strand | Q8A8D4 |
| B | Uncharacterized bacterial lipoprotein | protein | 218 | 4% helix, 49% strand | Q8A8D4 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 518 | 0.67 | 0.78 | 48 | empty |
Interfaces
1 interface between chains.
- A–B · 385 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 3GF6 · Crystal structure of a bacterial lipoprotein (bt_1233) from bacteroides thetaiotaomicron… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A8D4
- Elsewhere: RCSB PDB 3GF6 · PDBe 3GF6 · UniProt Q8A8D4
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