MolNFT v1 · #64711 · DNA
The rational design and structural analysis of a self-assembled three- dimensional DNA crystal
3GBI · DNA (5'- D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*…: “The rational design and structural analysis of a self-assembled three- dimensional DNA crystal”. X-ray diffraction. MolNFT v1 #64711 on GenesisL1: 3D structure, binding…
- PDB
- 3GBI
- Type
- DNA
- Length
- 42 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'- D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)- 3'); DNA…
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'- D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)- 3') | dna | 21 | — | — |
| B | DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3') | dna | 7 | — | — |
| C | DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3') | dna | 6 | — | — |
| D | DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*T)-3') | dna | 8 | — | — |
Interfaces
5 interfaces between chains.
- A–B · 343 Ų buried · 33 hydrogen bonds · nucleic-nucleic
- A–C · 300 Ų buried · 25 hydrogen bonds · nucleic-nucleic
- A–D · 284 Ų buried · 23 hydrogen bonds · nucleic-nucleic
- B–C · 94 Ų buried · 2 hydrogen bonds · nucleic-nucleic
- B–D · 93 Ų buried · 5 hydrogen bonds · nucleic-nucleic
Compared structures
- 3GBI · The Rational Design and Structural Analysis of a Self-Assembled Three-Dimensional DNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3GBI · PDBe 3GBI
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