MolNFT v1 · #64676 · protein

Structure of a F112H variant pduo-type ATP:CORRINOID adenosyltransferase from lactobacillus reuteri complexed with cobalamin and ATP

3GAH · Cobalamin adenosyltransferase pduo-like protein: “Structure of a F112H variant pduo-type ATP:CORRINOID adenosyltransferase from lactobacillus reuteri complexed…”. X-ray diffraction, 4 ligands (ATP, B12, MG), 1 pocket (best…

PDB: 3GAH
Type: protein
Length: 186 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cobalamin adenosyltransferase pduo-like protein
EC: 2.5.1.17
UniProt: Q50EJ2
Ligands: ATP, B12, MG, K
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 59% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cobalamin adenosyltransferase pduo-like protein (EC 2.5.1.17)	protein	186	59% helix, 4% strand	Q50EJ2

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · chains A
B12 · Cobalamin · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A
K · Potassium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.33	0.78	13	empty

Compared structures

3GAH · Structure of a F112H variant PduO-type ATP:corrinoid adenosyltransferase from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q50EJ2
Elsewhere: RCSB PDB 3GAH · PDBe 3GAH · UniProt Q50EJ2

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.