MolNFT v1 · #64611 · protein
Crystal structure of phospholipase A2 ammodytoxin a from vipera ammodytes ammodytes
3G8G · Phospholipase A2, ammodytoxin a: “Crystal structure of phospholipase A2 ammodytoxin a from vipera ammodytes ammodytes”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.49). MolNFT v1 #64611 on GenesisL1: 3D…
- PDB
- 3G8G
- Type
- protein
- Length
- 122 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase A2, ammodytoxin a
- EC
- 3.1.1.4
- UniProt
- P00626
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase A2, ammodytoxin a (EC 3.1.1.4) | protein | 122 | 48% helix, 9% strand | P00626 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 165 | 0.49 | 0.77 | 20 | empty |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 3G8G · Crystal structure of phospholipase A2 ammodytoxin A from vipera ammodytes ammodytes · the same entry in another collection · chain A against A, TM-score 1.00
- P00626 · AlphaFold monomer V2.0 prediction for basic phospholipase A2 ammodytoxin a (P00626) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00626
- Elsewhere: RCSB PDB 3G8G · PDBe 3G8G · UniProt P00626
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