MolNFT v1 · #6457 · DNA
Binding of a macrocyclic bisacridine and ametantrone to cgtacg involves similar unusual intercalation platforms (bisacridine complex)
1FD5 · DNA (5'-D(*CP*GP*TP*AP*CP*G)-3'): “Binding of a macrocyclic bisacridine and ametantrone to cgtacg involves similar unusual intercalation…”. X-ray diffraction, 3 ligands (B9A, CO, MG). MolNFT v1 #6457 on GenesisL1: 3D structure…
- PDB
- 1FD5
- Type
- DNA
- Length
- 11 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
- Ligands
- B9A, CO, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') | dna | 5 | — | — |
| B | DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') | dna | 6 | — | — |
Ligands and binding sites
- B9A · Macrocyclic-bis-9-amino-acridine · ligand · chains A, B
- CO · Cobalt (II) ion · metal · 2 copies · chains A, B
- MG · Magnesium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 176 Ų buried · 13 hydrogen bonds · nucleic-nucleic
Compared structures
- 1FD5 · Binding of a macrocyclic bisacridine and ametantrone to cgtacg involves similar unusual… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1FD5 · PDBe 1FD5
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