MolNFT v1 · #64512 · protein

Crystal structure of N-terminal domain of putative ATP/GTP binding protein from clostridium difficile 630

3G5J: “Crystal structure of N-terminal domain of putative ATP/GTP binding protein from clostridium difficile 630”. X-ray diffraction, 2 pockets (best druggability 0.73). MolNFT v1 #64512 on GenesisL1: 3D structure, binding sites and…

PDB: 3G5J
Type: protein
Length: 259 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative ATP/GTP binding protein
UniProt: Q18BI8
Pockets: 2 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 56% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative ATP/GTP binding protein	protein	130	55% helix, 13% strand	Q18BI8
B	Putative ATP/GTP binding protein	protein	129	57% helix, 14% strand	Q18BI8

Ligands and binding sites

PGE · Triethylene glycol · additive · 2 copies · chains A, B
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	179	0.73	0.89	20	PGE
2	200	0.69	0.86	29	PGE

Interfaces

1 interface between chains.

A–B · 1035 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3G5J · Crystal structure of N-terminal domain of putative ATP/GTP binding protein from… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q18BI8
Elsewhere: RCSB PDB 3G5J · PDBe 3G5J · UniProt Q18BI8

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.