MolNFT v1 · #64360 · protein
Crystal structure of putative conjugative transposon recombinase from clostridium difficile
3G13: “Crystal structure of putative conjugative transposon recombinase from clostridium difficile”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.47). MolNFT v1 #64360 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3G13
- Type
- protein
- Length
- 290 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative conjugative transposon recombinase
- UniProt
- Q180L7
- Ligands
- NA
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative conjugative transposon recombinase | protein | 152 | 49% helix, 19% strand | Q180L7 |
| B | Putative conjugative transposon recombinase | protein | 138 | 45% helix, 22% strand | Q180L7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.47 | 0.84 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1057 Ų buried · 21 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 3G13 · Crystal structure of putative conjugative transposon recombinase from Clostridium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q180L7
- Elsewhere: RCSB PDB 3G13 · PDBe 3G13 · UniProt Q180L7
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