MolNFT v1 · #6434 · protein
Photosystem II D1 C-terminal processing protease
1FCF · Photosystem II D1 protease: “Photosystem II D1 C-terminal processing protease”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.69). MolNFT v1 #6434 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1FCF
- Type
- protein
- Length
- 387 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Photosystem II D1 protease
- UniProt
- O04073
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II D1 protease | protein | 387 | 29% helix, 26% strand | O04073 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 772 | 0.69 | 0.76 | 70 | empty |
| 2 | 128 | 0.42 | 0.76 | 22 | empty |
| 3 | 126 | 0.39 | 0.74 | 24 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O04073
- Elsewhere: RCSB PDB 1FCF · PDBe 1FCF · UniProt O04073
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