MolNFT v1 · #64270 · protein
Recombinase in complex with ADP and metatungstate
3FYH · DNA repair and recombination protein rada: “Recombinase in complex with ADP and metatungstate”. X-ray diffraction, 4 ligands (ADP, W, MG), 2 pockets (best druggability 0.43). MolNFT v1 #64270 on GenesisL1: 3D structure, binding…
- PDB
- 3FYH
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair and recombination protein rada
- UniProt
- O73948
- Ligands
- ADP, W, MG, NA
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 296 | 42% helix, 22% strand | O73948 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- W · Tungsten ion · metal · 24 copies · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.43 | 0.79 | 15 | empty |
| 2 | 64 | 0.33 | 0.76 | 15 | MG |
Compared structures
- 3FYH · Recombinase in complex with ADP and metatungstate · the same entry in another collection · chain A against A, TM-score 1.00
- O73948 · AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (O73948) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O73948
- Elsewhere: RCSB PDB 3FYH · PDBe 3FYH · UniProt O73948
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