MolNFT v1 · #6425 · protein

Photosystem II D1 C-terminal processing protease

1FC6 · Photosystem II D1 protease: “Photosystem II D1 C-terminal processing protease”. X-ray diffraction, 3 pockets (best druggability 0.73). MolNFT v1 #6425 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1FC6
Type: protein
Length: 386 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Photosystem II D1 protease
UniProt: O04073
Pockets: 3 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photosystem II D1 protease	protein	386	29% helix, 28% strand	O04073

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	918	0.73	0.77	85	empty
2	165	0.46	0.76	20	empty
3	71	0.32	0.75	17	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

1FC6 · Photosystem II D1 C-terminal processing protease · the same entry in another collection · chain A against A, TM-score 1.00
O04073 · AlphaFold monomer V2.0 prediction for C-terminal processing peptidase, chloroplastic… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O04073
Elsewhere: RCSB PDB 1FC6 · PDBe 1FC6 · UniProt O04073

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