MolNFT v1 · #63857 · protein
Crystal structure of dimeric protein of unknown function and ferredoxin-like fold (YP_212648.1) from bacteroides fragilis nctc 9343 at 1.85 a resolution
3FMB: “Crystal structure of dimeric protein of unknown function and ferredoxin-like fold (YP_212648.1) from…”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.40). MolNFT v1 #63857 on GenesisL1: 3D structure, binding…
- PDB
- 3FMB
- Type
- protein
- Length
- 206 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dimeric protein of unknown function and ferredoxin-like fold
- UniProt
- Q5LAZ3
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Dimeric protein of unknown function and ferredoxin-like fold | protein | 103 | 35% helix, 31% strand | Q5LAZ3 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.40 | 0.77 | 21 | SO4, EDO |
| 2 | 85 | 0.39 | 0.77 | 21 | SO4 |
Interfaces
1 interface between chains.
- A–B · 1166 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3FMB · Crystal structure of dimeric protein of unknown function and ferredoxin-like fold… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5LAZ3
- Elsewhere: RCSB PDB 3FMB · PDBe 3FMB · UniProt Q5LAZ3
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