MolNFT v1 · #63824 · protein
Crystal structure of the trai C-terminal domain
3FLD · Protein trai: “Crystal structure of the trai C-terminal domain”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.33). MolNFT v1 #63824 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3FLD
- Type
- protein
- Length
- 305 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein trai
- EC
- 3.6.1.-
- UniProt
- P14565
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.33
Structure
x-ray diffraction · 2 distinct chains · 24% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein trai (EC 3.6.1.-) | protein | 152 | 24% helix, 32% strand | P14565 |
| B | Protein trai (EC 3.6.1.-) | protein | 153 | 23% helix, 31% strand | P14565 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.33 | 0.75 | 13 | empty |
| 2 | 51 | 0.29 | 0.76 | 13 | empty |
| 3 | 65 | 0.28 | 0.73 | 12 | SO4 |
Interfaces
1 interface between chains.
- A–B · 2263 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P14565
- Elsewhere: RCSB PDB 3FLD · PDBe 3FLD · UniProt P14565
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