MolNFT v1 · #63764 · protein
Crystal structure of phosphate bound PEB3
3FJM · Major antigenic peptide PEB3: “Crystal structure of phosphate bound PEB3”. X-ray diffraction, 1 ligand (PO4), 2 pockets (best druggability 0.59). MolNFT v1 #63764 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3FJM
- Type
- protein
- Length
- 462 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major antigenic peptide PEB3
- UniProt
- Q0PBL7
- Ligands
- PO4
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Major antigenic peptide PEB3 | protein | 231 | 42% helix, 23% strand | Q0PBL7 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.59 | 0.89 | 32 | PO4 |
| 2 | 72 | 0.44 | 0.82 | 24 | PO4 |
Interfaces
1 interface between chains.
- A–B · 1860 Ų buried · 36 hydrogen bonds · protein-protein
Compared structures
- 3FJM · crystal structure of phosphate bound PEB3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0PBL7
- Elsewhere: RCSB PDB 3FJM · PDBe 3FJM · UniProt Q0PBL7
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