MolNFT v1 · #63721 · protein

Apo-H49AFR with high content of pd ions

3FI6 · Ferritin light chain: “Apo-H49AFR with high content of pd ions”. X-ray diffraction, 3 ligands (PD, CD, SO4), 1 pocket (best druggability 0.33). MolNFT v1 #63721 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3FI6
Type: protein
Length: 172 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferritin light chain
UniProt: P02791
Ligands: PD, CD, SO4
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 75% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ferritin light chain	protein	172	75% helix, 0% strand	P02791

Ligands and binding sites

PD · Palladium ion · metal · 8 copies · chains A
CD · Cadmium ion · metal · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.33	0.77	17	empty

Compared structures

3FI6 · apo-H49AFr with high content of Pd ions · the same entry in another collection · chain A against A, TM-score 1.00
P02791 · AlphaFold monomer V2.0 prediction for ferritin light chain (P02791) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02791
Elsewhere: RCSB PDB 3FI6 · PDBe 3FI6 · UniProt P02791

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