MolNFT v1 · #63630 · protein

Structure of achromobactin synthetase protein D, (acsd)

3FFE: “Structure of achromobactin synthetase protein D, (acsd)”. X-ray diffraction, 7 pockets (best druggability 0.83). MolNFT v1 #63630 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3FFE
Type: protein
Length: 1,149 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Acsd
UniProt: Q93AT8
Pockets: 7 · best druggability 0.83

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Acsd	protein	574	45% helix, 19% strand	Q93AT8
B	Acsd	protein	575	46% helix, 19% strand	Q93AT8

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	492	0.83	0.90	72	empty
2	598	0.82	0.87	72	empty
3	191	0.72	0.89	42	empty
4	137	0.64	0.86	25	empty
5	70	0.35	0.76	14	empty

Interfaces

1 interface between chains.

A–B · 860 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

3FFE · Structure of Achromobactin Synthetase Protein D, (AcsD) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q93AT8
Elsewhere: RCSB PDB 3FFE · PDBe 3FFE · UniProt Q93AT8

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