MolNFT v1 · #63610 · protein

Crystal structure of dsba-like thioredoxin domain VF_A0457 from vibrio fischeri

3FEU · Putative lipoprotein: “Crystal structure of dsba-like thioredoxin domain VF_A0457 from vibrio fischeri”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.36). MolNFT v1 #63610 on GenesisL1: 3D structure, binding sites…

PDB: 3FEU
Type: protein
Length: 183 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative lipoprotein
UniProt: Q5E0B9
Ligands: MG
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative lipoprotein	protein	183	51% helix, 11% strand	Q5E0B9

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.36	0.75	17	empty

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

3FEU · Crystal Structure of DsbA-like thioredoxin domain VF_A0457 from Vibrio fischeri · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5E0B9
Elsewhere: RCSB PDB 3FEU · PDBe 3FEU · UniProt Q5E0B9

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