MolNFT v1 · #63575 · protein
Crystal structure of the complex of human chromobox homolog 5 (CBX5) with H3K9(ME)3 peptide
3FDT · Chromobox protein homolog 5: “Crystal structure of the complex of human chromobox homolog 5 (CBX5) with H3K9(ME)3 peptide”. X-ray diffraction. MolNFT v1 #63575 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3FDT
- Type
- protein
- Length
- 61 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chromobox protein homolog 5; H3K9(ME)3 peptide
- UniProt
- P45973, Q3BDD9
Structure
x-ray diffraction · 2 distinct chains · 23% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chromobox protein homolog 5 | protein | 51 | 27% helix, 53% strand | P45973 |
| T | H3K9(ME)3 peptide | protein | 10 | 0% helix, 30% strand | Q3BDD9 |
Interfaces
1 interface between chains.
- A–T · 606 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 modified (methylation).
Compared structures
- 3FDT · Crystal structure of the complex of human chromobox homolog 5 (CBX5) with H3K9(me)3… · the same entry in another collection · chain A against A, TM-score 1.00
- P45973 · AlphaFold monomer V2.0 prediction for chromobox protein homolog 5 (P45973) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P45973
- Every structure of UniProt Q3BDD9
- Elsewhere: RCSB PDB 3FDT · PDBe 3FDT · UniProt P45973 · UniProt Q3BDD9
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