MolNFT v1 · #63565 · protein
Crystal structure of uncharacterized protein from eubacterium ventriosum atcc 27560.
3FDI: “Crystal structure of uncharacterized protein from eubacterium ventriosum atcc 27560.”. X-ray diffraction, 2 ligands (SO4, CL), 5 pockets (best druggability 0.56). MolNFT v1 #63565 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3FDI
- Type
- protein
- Length
- 340 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A5Z9C0
- Ligands
- SO4, CL
- Pockets
- 5 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 54% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 161 | 54% helix, 16% strand | A5Z9C0 |
| B | Uncharacterized protein | protein | 179 | 53% helix, 15% strand | A5Z9C0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 169 | 0.56 | 0.81 | 31 | SO4, CL |
| 2 | 172 | 0.55 | 0.80 | 33 | SO4, CL |
| 3 | 91 | 0.36 | 0.76 | 19 | empty |
| 4 | 83 | 0.32 | 0.74 | 21 | empty |
| 5 | 79 | 0.31 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1240 Ų buried · 26 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 15 modified (engineered).
Compared structures
- 3FDI · Crystal structure of uncharacterized protein from Eubacterium ventriosum ATCC 27560. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5Z9C0
- Elsewhere: RCSB PDB 3FDI · PDBe 3FDI · UniProt A5Z9C0
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