MolNFT v1 · #63428 · protein
Crystal structure of the F140A mutant of SARS-coronovirus 3C-like protease at pH 6.0
3F9F · 3C-like proteinase: “Crystal structure of the F140A mutant of SARS-coronovirus 3C-like protease at pH 6.0”. X-ray diffraction, 8 pockets (best druggability 0.78). MolNFT v1 #63428 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3F9F
- Type
- protein
- Length
- 598 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3C-like proteinase
- EC
- 3.4.22.-
- UniProt
- P0C6U8
- Pockets
- 8 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 3C-like proteinase (EC 3.4.22.-) | protein | 299 | 26% helix, 30% strand | P0C6U8 |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1032 | 0.78 | 0.80 | 83 | empty |
| 2 | 231 | 0.48 | 0.74 | 37 | empty |
| 3 | 149 | 0.44 | 0.75 | 29 | empty |
| 4 | 145 | 0.40 | 0.73 | 22 | empty |
| 5 | 116 | 0.38 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1200 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 3F9F · Crystal Structure of the F140A mutant of SARS-Coronovirus 3C-like Protease at pH 6.0 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C6U8
- Elsewhere: RCSB PDB 3F9F · PDBe 3F9F · UniProt P0C6U8
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