MolNFT v1 · #63291 · protein
Crystal structure of a protein of unknown function from bacillus subtilis
3F5D · Protein ydea: “Crystal structure of a protein of unknown function from bacillus subtilis”. X-ray diffraction, 1 pocket (best druggability 0.39). MolNFT v1 #63291 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3F5D
- Type
- protein
- Length
- 193 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein ydea
- UniProt
- P96658
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein ydea | protein | 193 | 33% helix, 22% strand | P96658 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.39 | 0.77 | 14 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3F5D · Crystal Structure of a protein of unknown function from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
- P96658 · AlphaFold monomer V2.0 prediction for uncharacterized protease ydea (P96658) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P96658
- Elsewhere: RCSB PDB 3F5D · PDBe 3F5D · UniProt P96658
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