MolNFT v1 · #63280 · protein
HIV GP41 six-helix bundle composed of an ALPHA/BETA-peptide analogue of the chr domain in complex with an nhr domain alpha-peptide
3F50 · Envelope glycoprotein GP160: “HIV GP41 six-helix bundle composed of an ALPHA/BETA-peptide analogue of the chr domain in complex with an nhr…”. X-ray diffraction. MolNFT v1 #63280 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3F50
- Type
- protein
- Length
- 69 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Envelope glycoprotein GP160; ALPHA/BETA-peptide analogue of the HIV GP41 chr domain
- UniProt
- P04580
Structure
x-ray diffraction · 2 distinct chains · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Envelope glycoprotein GP160 | protein | 33 | 88% helix, 0% strand | P04580 |
| B | ALPHA/BETA-peptide analogue of the HIV GP41 chr domain | protein | 36 | 69% helix, 0% strand | — |
Ligands and binding sites
- GOL · Glycerol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 496 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (nonstandard).
Compared structures
- 3F50 · HIV gp41 six-helix bundle composed of an alpha/beta-peptide analogue of the CHR domain in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04580
- Elsewhere: RCSB PDB 3F50 · PDBe 3F50 · UniProt P04580
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