MolNFT v1 · #63173 · protein
Crystal structure of ycik from E. COLI, an oxidoreductase, complexed with NADP+ at 2.6A resolution
3F1K · Uncharacterized oxidoreductase ycik: “Crystal structure of ycik from E. COLI, an oxidoreductase, complexed with NADP+ at 2.6A resolution”. X-ray diffraction, 1 ligand (NAP), 1 pocket (best druggability 0.79). MolNFT v1 #63173 on…
- PDB
- 3F1K
- Type
- protein
- Length
- 252 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized oxidoreductase ycik
- EC
- 1.-.-.-
- UniProt
- P31808
- Ligands
- NAP
- Pockets
- 1 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized oxidoreductase ycik (EC 1.-.-.-) | protein | 252 | 43% helix, 13% strand | P31808 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 573 | 0.79 | 0.85 | 56 | NAP |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3F1K · Crystal Structure of yciK from E. coli, an oxidoreductase, complexed with NADP+ at 2.6A… · the same entry in another collection · chain A against A, TM-score 1.00
- P31808 · AlphaFold monomer V2.0 prediction for uncharacterized oxidoreductase ycik (P31808) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31808
- Elsewhere: RCSB PDB 3F1K · PDBe 3F1K · UniProt P31808
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