MolNFT v1 · #63161 · protein

Crystal structure of putative nudix hydrolase family member from chromobacterium violaceum

3F13: “Crystal structure of putative nudix hydrolase family member from chromobacterium violaceum”. X-ray diffraction, 4 pockets (best druggability 0.52). MolNFT v1 #63161 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3F13
Type: protein
Length: 287 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative nudix hydrolase family member
UniProt: Q7NWQ3
Pockets: 4 · best druggability 0.52

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative nudix hydrolase family member	protein	142	32% helix, 31% strand	Q7NWQ3
B	Putative nudix hydrolase family member	protein	145	34% helix, 30% strand	Q7NWQ3

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	123	0.52	0.81	25	empty
2	143	0.49	0.78	24	empty
3	86	0.35	0.76	23	empty
4	76	0.34	0.76	22	empty

Interfaces

1 interface between chains.

A–B · 958 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

3F13 · Crystal structure of putative nudix hydrolase family member from Chromobacterium violaceum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7NWQ3
Elsewhere: RCSB PDB 3F13 · PDBe 3F13 · UniProt Q7NWQ3

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