MolNFT v1 · #63097 · protein
Structure of para-ADP COMPLEX:TETRAGONAL form
3EZ6 · Plasmid partition protein a: “Structure of para-ADP COMPLEX:TETRAGONAL form”. X-ray diffraction, 2 ligands (ADP, MG), 7 pockets (best druggability 0.82). MolNFT v1 #63097 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3EZ6
- Type
- protein
- Length
- 782 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Plasmid partition protein a
- UniProt
- P07620
- Ligands
- ADP, MG
- Pockets
- 7 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Plasmid partition protein a | protein | 388 | 52% helix, 12% strand | P07620 |
| B | Plasmid partition protein a | protein | 394 | 50% helix, 11% strand | P07620 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1184 | 0.82 | 0.83 | 122 | ADP, MG |
| 2 | 176 | 0.48 | 0.76 | 26 | empty |
| 3 | 172 | 0.48 | 0.76 | 24 | empty |
| 4 | 65 | 0.45 | 0.82 | 18 | empty |
| 5 | 80 | 0.34 | 0.75 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 2764 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07620
- Elsewhere: RCSB PDB 3EZ6 · PDBe 3EZ6 · UniProt P07620
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