MolNFT v1 · #63050 · protein

Crystal structure of kgpdc from streptococcus mutans

3EXT · Rmpd (hexulose-6-phosphate synthase): “Crystal structure of kgpdc from streptococcus mutans”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.42). MolNFT v1 #63050 on GenesisL1: 3D structure, binding sites and…

PDB: 3EXT
Type: protein
Length: 211 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rmpd (hexulose-6-phosphate synthase)
EC: 4.1.1.85
UniProt: Q93DA8
Ligands: MG
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rmpd (hexulose-6-phosphate synthase) (EC 4.1.1.85)	protein	211	47% helix, 20% strand	Q93DA8

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	120	0.42	0.76	31	MG

Compared structures

3EXT · Crystal structure of KGPDC from Streptococcus mutans · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q93DA8
Elsewhere: RCSB PDB 3EXT · PDBe 3EXT · UniProt Q93DA8

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.