MolNFT v1 · #63047 · protein

Crystal structure of a nudix family hydrolase from lactobacillus brevis

3EXQ: “Crystal structure of a nudix family hydrolase from lactobacillus brevis”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.47). MolNFT v1 #63047 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3EXQ
Type: protein
Length: 159 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nudix family hydrolase
UniProt: Q03S37
Ligands: SO4
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nudix family hydrolase	protein	159	17% helix, 31% strand	Q03S37

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	171	0.47	0.76	25	empty

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

3EXQ · Crystal structure of a NUDIX family hydrolase from Lactobacillus brevis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q03S37
Elsewhere: RCSB PDB 3EXQ · PDBe 3EXQ · UniProt Q03S37

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